Tatjana SKRBIC

Position
Adjunct Professor
E-mail
tatjana.skrbic@unive.it
Scientific sector (SSD)
FISICA APPLICATA (A BENI CULTURALI, AMBIENTALI, BIOLOGIA E MEDICINA) [FIS/07]
Website
www.unive.it/people/tatjana.skrbic (personal record)
Research Institute
Research Institute for Complexity

Publications

Year Type Publication
Year Type Publication
2024 Journal Article Škrbić, Tatjana; Giacometti, Achille; Hoang, Trinh X.; Maritan, Amos; Banavar, Jayanth R. A Tale of Two Chains: Geometries of a Chain Model and Protein Native State Structures in POLYMERS, vol. 16, pp. 1-17 (ISSN 2073-4360)
DOI - URL correlato - ARCA card: 10278/5049248
2024 Journal Article Skrbic T.; Giacometti A.; Hoang T.X.; Maritan A.; Banavar J.R. Amino-Acid Characteristics in Protein Native State Structures in BIOMOLECULES, vol. 14 (ISSN 2218-273X)
DOI - ARCA card: 10278/5075701
2024 Journal Article Škrbić, Tatjana; Giacometti, Achille; Hoang, Trinh X.; Maritan, Amos; Banavar, Jayanth R. III. Geometrical framework for thinking about globular proteins: Turns in proteins in PROTEINS, vol. 92 (ISSN 0887-3585)
DOI - ARCA card: 10278/5049247
2023 Journal Article Jayanth R. Banavar, Achille Giacometti, Trinh X. Hoang, Amos Maritan, Tatjana Skrbic A geometrical framework for thinking about proteins in PROTEINS, vol. 91 (ISSN 1097-0134)
DOI - ARCA card: 10278/5036160
2023 Journal Article Škrbić, Tatjana; Giacometti, Achille; Hoang, Trinh X; Maritan, Amos; Banavar, Jayanth R II. Geometrical framework for thinking about globular proteins: The power of poking in PROTEINS, vol. 91 (ISSN 0887-3585)
DOI - ARCA card: 10278/5042080
2022 Journal Article Škrbić, Tatjana; Hoang, Trinh Xuan; Giacometti, Achille; Maritan, Amos; Banavar, Jayanth R. Proteins — a celebration of consilience in INTERNATIONAL JOURNAL OF MODERN PHYSICS B, vol. 36, pp. 1-15 (ISSN 0217-9792)
DOI - URL correlato - ARCA card: 10278/3747566
2021 Journal Article Škrbić, Tatjana; Maritan, Amos; Giacometti, Achille; Rose, George D.; Banavar, Jayanth R. Building blocks of protein structures: Physics meets biology in PHYSICAL REVIEW. E, vol. 104, pp. 014402-1-014402-7 (ISSN 2470-0045)
DOI - URL correlato - ARCA card: 10278/3741244
2021 Journal Article Škrbić, Tatjana; Maritan, Amos; Giacometti, Achille; Banavar, Jayanth R. Local sequence‐structure relationships in proteins in PROTEIN SCIENCE, vol. 30, pp. 818-829 (ISSN 0961-8368)
DOI - URL correlato - ARCA card: 10278/3737919
2021 Journal Article Škrbić, Tatjana; Hoang, Trinh Xuan; Giacometti, Achille; Maritan, Amos; Banavar, Jayanth R. Marginally compact phase and ordered ground states in a model polymer with side spheres in PHYSICAL REVIEW. E, vol. 104, pp. L0125011-L0125017 (ISSN 2470-0045)
DOI - URL correlato - ARCA card: 10278/3741675
2021 Journal Article Škrbić, Tatjana; Hoang, Trinh Xuan; Giacometti, Achille; Maritan, Amos; Banavar, Jayanth R. Spontaneous dimensional reduction and ground state degeneracy in a simple chain model in PHYSICAL REVIEW. E, vol. 104, pp. L0121011-L0121017 (ISSN 2470-0045)
DOI - ARCA card: 10278/3741196
2020 Journal Article Boso, Daniela; Braga, Tommaso; Ravasini, Simone; Škrbić, Tatjana; Puglisi, Andrea; Pinato, Odra; Chillon, Alberto; Frare, Maria Chiara; Giacometti, Achille An integrated DEM-FEM approach to study breakage in packing of glass cartridges on a conveyor belt in GRANULAR MATTER, vol. 22, pp. 1-16 (ISSN 1434-5021)
DOI - URL correlato - ARCA card: 10278/3728348
2020 Journal Article Carrer, Manuel; Škrbić, Tatjana; Bore, Sigbjørn Løland; Milano, Giuseppe; Cascella, Michele; Giacometti, Achille Can Polarity-Inverted Surfactants Self-Assemble in Nonpolar Solvents? in JOURNAL OF PHYSICAL CHEMISTRY. B, CONDENSED MATTER, MATERIALS, SURFACES, INTERFACES & BIOPHYSICAL, vol. 124, pp. 6448-6458 (ISSN 1520-6106)
DOI - URL correlato - ARCA card: 10278/3728344
2020 Journal Article Dongmo Foumthuim, Cedrix J; Carrer, Manuel; Houvet, Maurine; Škrbić, Tatjana; Graziano, Giuseppe; Giacometti, Achille Can the roles of polar and non-polar moieties be reversed in non-polar solvents? in PHYSICAL CHEMISTRY CHEMICAL PHYSICS, vol. 22, pp. 25848-25858 (ISSN 1463-9076)
DOI - URL correlato - ARCA card: 10278/3733195
2019 Journal Article Škrbić, Tatjana; Banavar, Jayanth R.; Giacometti, Achille Chain stiffness bridges conventional polymer and bio-molecular phases in THE JOURNAL OF CHEMICAL PHYSICS, vol. 151, pp. 174901 (ISSN 0021-9606)
DOI - URL correlato - ARCA card: 10278/3719896
2019 Journal Article Škrbić, Tatjana; Hoang, Trinh Xuan; Maritan, Amos; Banavar, Jayanth R; Giacometti, Achille Local symmetry determines the phases of linear chains: a simple model for the self-assembly of peptides in SOFT MATTER, vol. 15, pp. 5596-5613 (ISSN 1744-683X)
DOI - URL correlato - ARCA card: 10278/3716089
2019 Journal Article Škrbić, Tatjana; Hoang, Trinh X; Maritan, Amos; Banavar, Jayanth R; Giacometti, Achille The elixir phase of chain molecules in PROTEINS, vol. 87, pp. 176-187 (ISSN 0887-3585)
DOI - URL correlato - ARCA card: 10278/3707689
2018 Journal Article Hayashi, Tomohiko; Inoue, Masao; Yasuda, Satoshi; Petretto, Emanuele; Škrbić, Tatjana; Giacometti, Achille; Kinoshita, Masahiro Universal effects of solvent species on the stabilized structure of a protein in THE JOURNAL OF CHEMICAL PHYSICS, vol. 149, pp. 0451051-04510517 (ISSN 0021-9606)
DOI - URL correlato - ARCA card: 10278/3702194
2018 Journal Article Škrbić, Tatjana; Zamuner, Stefano; Hong, Rolando; Seno, Flavio; Laio, Alessandro; Trovato, Antonio Vibrational entropy estimation can improve binding affinity prediction for non-obligatory protein complexes in PROTEINS, vol. 86, pp. 393-404 (ISSN 0887-3585)
DOI - URL correlato - ARCA card: 10278/3696232
2017 Journal Article Hayashi, Tomohiko; Yasuda, Satoshi; Škrbić, Tatjana; Giacometti, Achille; Kinoshita, Masahiro Unraveling protein folding mechanism by analyzing the hierarchy of models with increasing level of detail in THE JOURNAL OF CHEMICAL PHYSICS, vol. 147, pp. 125102 (ISSN 0021-9606)
DOI - URL correlato - ARCA card: 10278/3691653
2016 Journal Article Škrbić, Tatjana; Hoang, Trinh X.; Giacometti, Achille Effective stiffness and formation of secondary structures in a protein-like model in THE JOURNAL OF CHEMICAL PHYSICS, vol. 145, pp. 0849041-08490410 (ISSN 0021-9606)
DOI - URL correlato - ARCA card: 10278/3677228
2016 Journal Article Škrbić, Tatjana; Badasyan, Artem; Hoang, Trinh Xuan; Podgornik, Rudolf; Giacometti, Achille From polymers to proteins: the effect of side chains and broken symmetry on the formation of secondary structures within a Wang-Landau approach in SOFT MATTER, vol. 12, pp. 4783-4793 (ISSN 1744-683X)
DOI - URL correlato - ARCA card: 10278/3673264
2014 Journal Article Covino Roberto; Skrbic Tatjana; a Beccara Silvio; Faccioli Pietro; Micheletti Cristian The role of non-native interactions in the folding of knotted proteins: insights from molecular dynamics simulations in BIOMOLECULES, vol. 4, pp. 1-19 (ISSN 2218-273X)
DOI - ARCA card: 10278/3725616
2013 Journal Article a Beccara Silvio; Skrbic Tatjana; Covino Roberto; Micheletti Cristian; Faccioli Pietro Folding Pathways of a Knotted Protein with a Realistic Atomistic Force Field in PLOS COMPUTATIONAL BIOLOGY, vol. 9, pp. e1003002 (ISSN 1553-734X)
DOI - ARCA card: 10278/3725615
2013 Journal Article Cazzolli, Giorgia; Škrbić, Tatjana; Guella, Graziano; Faccioli, Pietro Unfolding thermodynamics of cysteine-rich proteins and molecular thermal-adaptation of marine ciliates in BIOMOLECULES, vol. 3, pp. 967-985 (ISSN 2218-273X)
DOI - URL correlato - ARCA card: 10278/3725617
2012 Journal Article A Beccara Silvio; Skrbic Tatjana; Covino Roberto; Faccioli Pietro Dominant folding pathways of a WW domain in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, vol. 109, pp. 2330-2335 (ISSN 0027-8424)
DOI - ARCA card: 10278/3725543
2012 Journal Article Skrbic Tatjana; Micheletti Cristian.; Faccioli Pietro The role of non-native interactions in the folding of knotted proteins in PLOS COMPUTATIONAL BIOLOGY, vol. 8, pp. e1002504 (ISSN 1553-734X)
DOI - ARCA card: 10278/3725613
2007 Journal Article Skrbic Tatjana; Moroni Saverio; Baroni Stefano Computational spectroscopy of carbon monoxide isotopomers in helium clusters in JOURNAL OF PHYSICAL CHEMISTRY. A, MOLECULES, SPECTROSCOPY, KINETICS, ENVIRONMENT, & GENERAL THEORY, vol. 111, pp. 7640-7645 (ISSN 1089-5639)
DOI - ARCA card: 10278/3725618
2007 Journal Article Skrbic Tatjana; Moroni Saverio; Baroni Stefano Unraveling excited states of doped helium clusters in JOURNAL OF PHYSICAL CHEMISTRY. A, MOLECULES, SPECTROSCOPY, KINETICS, ENVIRONMENT, & GENERAL THEORY, vol. 111, pp. 12749-12753 (ISSN 1089-5639)
DOI - ARCA card: 10278/3725619
2004 Journal Article Mihailovic D.T.; Kapor D.; Hogrefe C.; Lazic J.; Tosic T. Parameterization of Albedo over Heterogeneous Surfaces in Coupled Land-Atmosphere Schemes for Environmental Modeling. Part I: Theoretical Background in ENVIRONMENTAL FLUID MECHANICS, vol. 4, pp. 57-77 (ISSN 1567-7419)
DOI - ARCA card: 10278/3727051
2003 Journal Article Budinski-Petkovic Ljuba; Tosic Tatjana Adsorption, desorption and diffusion of extended objects on a square lattice in PHYSICA. A, vol. 329, pp. 350-356 (ISSN 0378-4371)
DOI - ARCA card: 10278/3726923
2002 Journal Article Milica Pavkov; Milan Pantic; Marijana Kircan; Tatjana Tosic Compensation Temperatures in Systems with Three and Four Sublattices and Superlattices in JOURNAL OF RESEARCH IN PHYSICS (ONLINE), vol. 29, pp. 67-77 (ISSN 2217-933X)
- ARCA card: 10278/3727054
2002 Article in Conference Proceedings Kapor D.; Mihajlovic D. T.; Tosic T.; Rao S. T. ; Hogrefe C. An approach for the aggregation of albedo in calculating the radiative fluxes over heterogeneous surfaces in atmospheric models in Darko, Kapor; Dragutin, Mihailović; Tatjana, Tosic ; S. T., Rao; Cristian, Hogrefe, Integrated Assessment and Decision Support Proceedings of the First Biennal Meeting of the International Environmental Modelling and Software Society, Rizzoli A. E. and Jakeman A. J., vol. 2, pp. 448-453, Convegno: 1st International Congress on Environmental Modelling and Software - Lugano, Switzerland - June 2002, 24-27 June 2002
- ARCA card: 10278/3727247

List of selected publications