Giulio Ermanno PIBIRI

Position
Researcher
Telephone
041 234 8583
E-mail
giulioermanno.pibiri@unive.it
Scientific sector (SSD)
Informatica [INFO-01/A]
Website
www.unive.it/people/giulioermanno.pibiri (personal record)
Office
Department of Environmental Sciences, Informatics and Statistics
Website: https://www.unive.it/dep.dais
Where: Campus scientifico via Torino
Room: office Z.B09 (Zeta B building)

Publications

Year Type Publication
Year Type Publication
2024 Journal Article Karami M.; Mohammadi A.S.; Martin M.; Ekim B.; Shen W.; Guo L.; Xu M.; Pibiri G.E.; Patro R.; Sahlin K. Designing efficient randstrobes for sequence similarity analyses in BIOINFORMATICS, vol. 40 (ISSN 1367-4803)
DOI - ARCA card: 10278/5060401
2024 Journal Article Jason Fan; Jamshed Khan; Noor Pratap Singh; Giulio Ermanno Pibiri; Rob Patro Fulgor: a fast and compact k-mer index for large-scale matching and color queries in ALGORITHMS FOR MOLECULAR BIOLOGY, vol. 19 (ISSN 1748-7188)
DOI - URL correlato - ARCA card: 10278/5048982
2024 Journal Article Alessio Campanelli, Giulio Ermanno Pibiri, Jason Fan, Rob Patro Where the patterns are: repetition-aware compression for colored de Bruijn graphs in JOURNAL OF COMPUTATIONAL BIOLOGY, vol. null (ISSN 1066-5277)
DOI - URL correlato - ARCA card: 10278/5081931
2024 Article in Conference Proceedings Pibiri G.E.; Fan J.; Patro R. Meta-colored Compacted de Bruijn Graphs , Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Springer Science and Business Media Deutschland GmbH, vol. 14758, pp. 131-146, Convegno: 28th International Conference on Research in Computational Molecular Biology, RECOMB 2024, 2024 (ISBN 9781071639887; 9781071639894) (ISSN 0302-9743)
DOI - ARCA card: 10278/5060402
2024 Article in Conference Proceedings Hermann S.; Lehmann H.-P.; Pibiri G.E.; Sanders P.; Walzer S. PHOBIC: Perfect Hashing With Optimized Bucket Sizes and Interleaved Coding , In 32nd Annual European Symposium on Algorithms, Leibniz International Proceedings in Informatics (LIPIcs), vol. 308, Convegno: In 32nd Annual European Symposium on Algorithms (ISSN 1868-8969)
DOI - ARCA card: 10278/5081929
2024 Article in Conference Proceedings Koerkamp R.G.; Pibiri G.E. The mod-minimizer: A Simple and Efficient Sampling Algorithm for Long k-mers , 24th International Workshop on Algorithms in Bioinformatics (WABI 2024), Leibniz International Proceedings in Informatics (LIPIcs), vol. 312, Convegno: 24th International Workshop on Algorithms in Bioinformatics (WABI 2024) (ISSN 1868-8969)
DOI - ARCA card: 10278/5081930
2023 Journal Article Pibiri, Giulio Ermanno; Shibuya, Yoshihiro; Limasset, Antoine Locality-preserving minimal perfect hashing of k-mers in BIOINFORMATICS, vol. 39, pp. I534-I543 (ISSN 1367-4803)
DOI - ARCA card: 10278/5034708
2023 Journal Article Schmidt, Sebastian; Khan, Shahbaz; Alanko, Jarno N; Pibiri, Giulio E; Tomescu, Alexandru I Matchtigs: minimum plain text representation of k-mer sets in GENOME BIOLOGY, vol. 24, pp. 136 (ISSN 1474-760X)
DOI - ARCA card: 10278/5034706
2023 Journal Article Pibiri, Giulio Ermanno On weighted k-mer dictionaries in ALGORITHMS FOR MOLECULAR BIOLOGY, vol. 18, pp. 3 (ISSN 1748-7188)
DOI - ARCA card: 10278/5034715
2023 Journal Article Pibiri, G. E.; Trani, R. Parallel and External-Memory Construction of Minimal Perfect Hash Functions with PTHash in IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING, vol. 36, pp. 1249-1259 (ISSN 1041-4347)
DOI - URL correlato - ARCA card: 10278/5048981
2023 Article in Conference Proceedings Jason Fan; Noor Pratap Singh; Jamshed Khan; Giulio Ermanno Pibiri; Rob Patro Fulgor: A Fast and Compact {k-mer} Index for Large-Scale Matching and Color Queries , 23rd International Workshop on Algorithms in Bioinformatics (WABI 2023), Belazzougui, Djamal and Ouangraoua, Aida, vol. 273, Convegno: 23rd International Workshop on Algorithms in Bioinformatics (WABI 2023) (ISBN 978-3-95977-294-5)
DOI - ARCA card: 10278/5034712
2023 Article in Conference Proceedings Fan J.; Khan J.; Pibiri G.E.; Patro R. Spectrum Preserving Tilings Enable Sparse and Modular Reference Indexing , Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Springer Science and Business Media Deutschland GmbH, vol. 13976, pp. 21-40, Convegno: 27th International Conference on Research in Computational Molecular Biology, RECOMB 2023, 2023 (ISBN 978-3-031-29118-0; 978-3-031-29119-7) (ISSN 0302-9743)
DOI - ARCA card: 10278/5023385
2023 Article in Conference Proceedings Calzavara S.; Cazzaro L.; Pibiri G.E.; Prezza N. Verifiable Learning for Robust Tree Ensembles , CCS 2023 - Proceedings of the 2023 ACM SIGSAC Conference on Computer and Communications Security, Association for Computing Machinery, Inc, pp. 1850-1864, Convegno: 30th ACM SIGSAC Conference on Computer and Communications Security, CCS 2023, 2023 (ISBN 9798400700507)
DOI - ARCA card: 10278/5046160
2022 Journal Article Pibiri G.E. Sparse and skew hashing of K-mers in BIOINFORMATICS, vol. 38, pp. I185-I194 (ISSN 1367-4803)
DOI - ARCA card: 10278/5023382
2022 Article in Conference Proceedings Pibiri G.E. On Weighted k-mer Dictionaries in Giulio Ermanno Pibiri, Leibniz International Proceedings in Informatics, LIPIcs, Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, vol. 242, Convegno: 22nd International Workshop on Algorithms in Bioinformatics, WABI 2022, 2022 (ISBN 9783959772433) (ISSN 1868-8969)
DOI - ARCA card: 10278/5023380
2021 Journal Article Perego R.; Pibiri G.E.; Venturini R. Compressed Indexes for Fast Search of Semantic Data in IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING, vol. 33, pp. 3187-3198 (ISSN 1041-4347)
DOI - ARCA card: 10278/5009270
2021 Journal Article Pibiri G.E.; Venturini R. Practical trade-offs for the prefix-sum problem in SOFTWARE-PRACTICE & EXPERIENCE, vol. 51, pp. 921-949 (ISSN 0038-0644)
DOI - ARCA card: 10278/5009273
2021 Journal Article Pibiri G.E.; Kanda S. Rank/select queries over mutable bitmaps in INFORMATION SYSTEMS, vol. 99, pp. 101756 (ISSN 0306-4379)
DOI - ARCA card: 10278/5009263
2021 Journal Article Giulio Ermanno Pibiri; Rossano Venturini Techniques for Inverted Index Compression in ACM COMPUTING SURVEYS, vol. 53, pp. 1-36 (ISSN 0360-0300)
DOI - ARCA card: 10278/5009264
2021 Article in Conference Proceedings Pibiri G.E. Fast and Compact Set Intersection through Recursive Universe Partitioning , Data Compression Conference Proceedings, 10662 LOS VAQUEROS CIRCLE, PO BOX 3014, LOS ALAMITOS, CA 90720-1264 USA, Institute of Electrical and Electronics Engineers Inc., vol. 2021-, pp. 293-302, Convegno: 2021 Data Compression Conference, DCC 2021, 2021 (ISBN 978-1-6654-0333-7) (ISSN 1068-0314)
DOI - ARCA card: 10278/5009274
2021 Article in Conference Proceedings Pibiri G.E.; Trani R. PTHash: Revisiting FCH Minimal Perfect Hashing , SIGIR 2021 - Proceedings of the 44th International ACM SIGIR Conference on Research and Development in Information Retrieval, 1515 BROADWAY, NEW YORK, NY 10036-9998 USA, Association for Computing Machinery, Inc, pp. 1339-1348, Convegno: 44th International ACM SIGIR Conference on Research and Development in Information Retrieval, SIGIR 2021, 2021 (ISBN 9781450380379)
DOI - ARCA card: 10278/5009268
2021 Article in Conference Proceedings Bruno A.; Nardini F.M.; Pibiri G.E.; Trani R.; Venturini R. TSXor: A Simple Time Series Compression Algorithm , Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Springer Science and Business Media Deutschland GmbH, vol. 12944, pp. 217-223, Convegno: 28th International Symposium on String Processing and Information Retrieval, SPIRE 2021, 2021 (ISBN 978-3-030-86691-4; 978-3-030-86692-1) (ISSN 0302-9743)
DOI - ARCA card: 10278/5009276
2021 Poster in Atti di convegno Perego R.; Pibiri G.E.; Venturini R. Compressed indexes for fast search of semantic data (extended abstract) , Proceedings - International Conference on Data Engineering, 10662 LOS VAQUEROS CIRCLE, PO BOX 3014, LOS ALAMITOS, CA 90720-1264 USA, IEEE Computer Society, vol. 2021-, pp. 2325-2326, Convegno: 37th IEEE International Conference on Data Engineering, ICDE 2021, 2021 (ISBN 978-1-7281-9184-3) (ISSN 1084-4627)
DOI - ARCA card: 10278/5009277
2020 Journal Article Pibiri G.E.; Venturini R. On optimally partitioning variable-byte codes in IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING, vol. 32, pp. 1812-1823 (ISSN 1041-4347)
DOI - ARCA card: 10278/5009271
2020 Article in Conference Proceedings Gog S.; Pibiri G.E.; Venturini R. Efficient and Effective Query Auto-Completion , SIGIR 2020 - Proceedings of the 43rd International ACM SIGIR Conference on Research and Development in Information Retrieval, 1601 Broadway, 10th Floor, NEW YORK, NY, UNITED STATES, Association for Computing Machinery, Inc, pp. 2271-2280, Convegno: 43rd Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, SIGIR 2020, 2020 (ISBN 9781450380164)
DOI - ARCA card: 10278/5009269
2019 Journal Article Pibiri G.E.; Venturini R. Handling massive n-gram datasets efficiently in ACM TRANSACTIONS ON INFORMATION SYSTEMS, vol. 37, pp. 1-41 (ISSN 1046-8188)
DOI - ARCA card: 10278/5009272
2019 Article in Conference Proceedings Pibiri G.E.; Petri M.; Moffat A. Fast dictionary-based compression for inverted indexes , ACM WSDM, 1515 BROADWAY, NEW YORK, NY 10036-9998 USA, ASSOC COMPUTING MACHINERY, pp. 6-14, Convegno: ACM Conference on Web Search and Data Mining (WSDM) (ISBN 9781450359405)
DOI - ARCA card: 10278/5009267
2017 Journal Article Pibiri G.E.; Venturini R. Clustered Elias-Fano indexes in ACM TRANSACTIONS ON INFORMATION SYSTEMS, vol. 36, pp. 1-33 (ISSN 1046-8188)
DOI - ARCA card: 10278/5023381
2017 Article in Conference Proceedings Pibiri G.E.; Venturini R. Dynamic elias-fano representation , Leibniz International Proceedings in Informatics, LIPIcs, Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, vol. 78, Convegno: 28th Annual Symposium on Combinatorial Pattern Matching, CPM 2017, 2017 (ISBN 9783959770392) (ISSN 1868-8969)
DOI - ARCA card: 10278/5023383
2017 Article in Conference Proceedings Pibiri G.E.; Venturini R. Efiicient data structures for massive n-gram datasets , SIGIR 2017 - Proceedings of the 40th International ACM SIGIR Conference on Research and Development in Information Retrieval, 1515 BROADWAY, NEW YORK, NY 10036-9998 USA, Association for Computing Machinery, Inc, pp. 615-624, Convegno: 40th International ACM SIGIR Conference on Research and Development in Information Retrieval, SIGIR 2017, 2017 (ISBN 9781450350228)
DOI - ARCA card: 10278/5023384

List of selected publications